miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|5816154|gb|AI987070.1|AI987070 ACTGAGGCCCCTCTTAATCCTAAGATCAATAGAGAAAAGATGACTCAGATTATGTTCGAAACCTTCAACACTCCCGCAAT
GTACGTCAATATCCAGGCAGTTCTCTCCCTCTACGCATCTGGAAGAACCACCGGAATCGTTCTCGATACTGGAGATGGTG
TGACTCACACAGTTCCCATCTACGAGGGATATGCCCTTCCCCATGCCATCCAGAGACTCGATCTGGCTGGTCGTGATCTC
ACTGATTATCTCATGAAGATTCTTACTGAGAGAGGATATACCTTCACCACCACTGCCGAGAGGGAAATCGTGCGTGATAT
CAAGGAGAAATTGTGCTATGTGGCCCATGACTTCGAACAGGAAATGGCTACTGCTGCTTCCTCTTCAACTCTCGAGAAGA
GCTATGAACTTCCCGATGGACAAGTAATCACCATTGCAAACGAGAGATTCCGTTGTCCTGAGGTTCTCTTNCAGCCTGCA
TTCATTGGAATGGCATCGACTGTAATTCACGAGACGACCCTACACAGTATCATGAAGTGCGATGTCGATATCAGAAAGGA
CCTGTATGCCACAC




Most similar to sp|O18500|ACT2_SACKO

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O18500|ACT2_SACKO Actin-2 OS=Saccoglossus kowalevskii PE=2 SV=1
          Length = 376

 Score =  346 bits (888), Expect = 5e-95
 Identities = 173/190 (91%), Positives = 179/190 (94%)
 Frame = +1

Query: 1   TEAPLNPKINREKMTQIMFETFNTPAMYVNIQAVLSLYASGRTTGIVLDTGDGVTHTVPI 180
           TEAPLNPK NREKMTQIMFETFNTPAMYV IQAVLSLYASGRTTGIV+DTGDGVTHTVPI
Sbjct: 107 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDTGDGVTHTVPI 166

Query: 181 YEGYALPHAIQRLDLAGRDLTDYLMKILTERGYTFTTTAEREIVRDIKEKLCYVAHDFEQ 360
           YEGYALPHAI RLDLAGRDLTDYLMKILTERGY+FTTTAEREIVRDIKEKLCYVA DFEQ
Sbjct: 167 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQ 226

Query: 361 EMATAASSSTLEKSYELPDGQVITIANERFRCPEVLXQPAFIGMASTVIHETTLHSIMKC 540
           EMATAASSS+LEKSYELPDGQVITI NERFRCPE L QPAF+GM S  IHETT +SIMKC
Sbjct: 227 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPAFLGMESPGIHETTYNSIMKC 286

Query: 541 DVDIRKDLYA 570
           D+DIRKDLYA
Sbjct: 287 DIDIRKDLYA 296